man asnval (Commandes) - validate ASN.1 biological sequence records
NAME
asnval - validate ASN.1 biological sequence records
SYNOPSIS
asnval [-] [-A] [-E str] [-G] [-J] [-L filename] [-M] [-P N] [-Q N] [-R N] [-T] [-Y] [-Z] [-a type] [-b] [-c] [-i filename] [-k] [-l] [-o filename] [-p path] [-r] [-u] [-v N] [-x str]
DESCRIPTION
asnval is a command-line tool to validate ASN.1-format biological sequence records.
OPTIONS
A summary of options is included below.
- -
- Print usage message
- -A
- Validate Alignments
- -E str
- Only Error Code to Show
- -G
- GI lookup from accession
- -J
- Require ISO-JTA?
- -L filename
- Log File
- -M
- Match locus_tag against General ID
- -P N
- Highest severity for error to show:
- 0
- none
- 1
- informational
- 2
- warning
- 3
- error (default for -Q)
- 4
- grounds for rejection (default for -P, -R)
- -Q N
- Lowest severity for error to show, per P
- -R N
- Severity for error in return code, per P
- -T
- Use Threads
- -Y
- Check against old IDs
- -Z
- Remote CDS product fetch
- -a str
- -a type Input ASN.1 type:
- a
- any (autodetected; default)
- e
- Seq-entry
- b
- Bioseq
- s
- Bioseq-set
- m
- Seq-submit
- t
- batch processing (suitable for official releases; autodetects specific type)
- -b
- Bioseq-set is Binary
- -c
- Bioseq-set is Compressed
- -i filename
- Single input file (standard input by default)
- -k
- Local fetching
- -l
- Lock components in advance
- -o filename
- Single output file
- -p path
- Path to ASN.1 Files [String]
- -r
- Remote Fetching from ID
- -u
- Recurse
- -v N
- Verbosity, from 0 (default) to 3
- -x str
- File selection substring (.ent by default)
AUTHOR
The National Center for Biotechnology Information.