man entrcmd (Commandes) - non-interactive command line interface for Entrez
NAME
entrcmd - non-interactive command line interface for Entrez
SYNOPSIS
entrcmd [-] [-c] [-d str] [-e str] [-f] [-g F] [-h] [-i str] [-l str] [-n filename] [-o filename] -p str [-r] [-s] [-t str] [-u str] [-w str] [-x str] [-y N]
DESCRIPTION
entrcmd is a non-interactive command-line interface which allows a user to perform a series of neighboring and output operations, based upon an initial set of UIDs or a boolean expression which describes a set of UIDs. Alternatively, it can be used to display an alphabetically sorted list of terms near an initial term.
OPTIONS
A summary of options is included below.
- -
- Print usage message
- -c
- 'Check' WWW output Forms
- -d str
- Initial database (default = m)
- -e str
- Boolean expression
- -f
- For WWW output, use Forms
- -g F
- Do not use WWW-style encoding for special input characters
- -h
- Print detailed help. Requires, but ignores, -p str
- -i str
- Comma-delimited list of files to import for named UID list
- -l str
- Taxonomy lookup string
- -n filename
- On-the-fly neighboring from filename
- -o filename
- Output file (default = stdout)
- -p str
- Program of commands
- -r
- Get sequences from ID Repository
- -s
- Display status report
- -t str
- Produce a list of terms
- -u str
- Comma-delimited list of UIDs
- -w str
- Produce WWW/HTML formatted output, using str (/htbin is recommended) as the directory prefix for linked hypertext items.
- -x str
- Name of export file for named UID list
- -y N
- Complexity:
- 1
- bioseq only
- 2
- bioseq set
- 3
- nuc-prot set (default)
AUTHOR
The National Center for Biotechnology Information.