man ngmx (Commandes) - ngmx VERSION 3.3_beta_20050823
NAME
ngmx VERSION 3.3_beta_20050823
SYNOPSIS
ngmx -f traj.xtc -s topol.tpr -n index.ndx -[no]h -nice int -b time -e time -dt time
DESCRIPTION
ngmx is the Gromacs trajectory viewer. This program reads a trajectory file, a run input file and an index file and plots a 3D structure of your molecule on your standard X Window screen. No need for a high end graphics workstation, it even works on Monochrome screens.
The following features have been implemented: 3D view, rotation, translation and scaling of your molecule(s), labels on atoms, animation of trajectories, hardcopy in PostScript format, user defined atom-filters runs on MIT-X (real X), open windows and motif, user friendly menus, option to remove periodicity, option to show computational box.
Some of the more common X command line options can be used:
-bg, -fg change colors, -font fontname, changes the font.
FILES
-f traj.xtc Input Generic trajectory: xtc trr trj gro g96 pdb
-s topol.tpr Input Generic run input: tpr tpb tpa xml
-n index.ndx Input, Opt. Index file
OTHER OPTIONS
-[no]h no Print help info and quit
-nice int 0 Set the nicelevel
-b time 0 First frame (ps) to read from trajectory
-e time 0 Last frame (ps) to read from trajectory
-dt time 0 Only use frame when t MOD dt = first time (ps)
- Balls option does not work
- Some times dumps core without a good reason