man protml (Commandes) - MolPhy - program package for MOLecular PHYlogenetics
NAME
MolPhy - program package for MOLecular PHYlogenetics
Molphy consists of several programs:
protml
- Maximum Likelihood Inference of Protein Phylogeny
nucml
- Maximum Likelihood Inference of Nucleic Acid Phylogeny
protst
- Basic Statistics of Protein Sequences
nucst
- Basic Statistics of Nucleic Acid Sequence
njdist
- Neighbor Joining Phylogeny from Distance Matrix
totalml
- Total ML Inference of Molecular Phylogeny
SYNOPSIS
protml
[switches]
sequence_file
[topology_file]
nucml
[switches]
sequence_file
[topology_file]
protst
[switches]
sequence_file
nucst
[switches]
sequence_file
njdist
[switches]
distance_matrix_file
totalml
[switches]
LLS_files
DESCRIPTION
This is the Debian GNU/Linux version of the MOLPHY (ProtML) distribution, version 2.3. Copyright (c) 1992-1996, Jun Adachi & Masami Hasegawa. All rights reserved.
MOLPHY is a program package for MOLecular PHYlogenetics.
ProtML is a main program in MOLPHY for inferring evolutionary trees from PROTein (amino acid) sequences by using the Maximum Likelihood method.
Each single program has a -h switch which shows some help.
AUTHOR
This manual page was written by Andreas Tille <tille@debian.org>, for the Debian GNU/Linux system (but may be used by others).