man mollist (Commandes) - MolPhy Utilities - program package for MOLecular PHYlogenetics
NAME
MolPhy Utilities - program package for MOLecular PHYlogenetics
The Molphy package includes several Perl utilities:
mollist
- get identifiers list
molrev
- reverse DNA sequences
molcat
- concatenate sequences
molcut
- get partial sequences
molmerge
- merge sequences
nuc2ptn
- DNA -> Amino acid
rminsdel
- remove INS/DEL sites
molcodon
- get specified codon sites
molinfo
- get varied sites
mol2mol
- MOLPHY format beautifer
int2mol
- Interleaved -> MOLPHY
mol2int
- MOLPHY -> Interleaved
mol2phy
- MOLPHY -> Sequential
phy2mol
- Sequential -> MOLPHY
must2mol
- MUST -> MOLPHY
many more perl conversion utilities which are not further described
SYNOPSIS
mollist
[sequence_file]
molrev
[sequence_file]
molcat
[sequence_file]
molcut
[sequence_file]
molmerge
[sequence_file]
nuc2ptn
[switches]
[sequence_file]
rminsdel
[switches]
[sequence_file]
molcodon
[sequence_file]
molinfo
[switches]
[sequence_file]
mol2mol
[sequence_file]
inl2mol
[sequence_file]
mol2int
[sequence_file]
mol2phy
[sequence_file]
phy2mol
[sequence_file]
must2mol
[sequence_file]
ali2mol
[sequence_file]
clus2mol
[sequence_file]
degene4l
[switches]
[sequence_file]
degene4
[switches]
[sequence_file]
disjoint
[sequence_file]
dna2ami
[options]
[no_align_files]
eali2mol
[EMBL_ALIGN_file]
egetcds
[EMBL_file]
getcds
[EMBL_file]
egetcds
[Genbank_file]
info2mol
[sequence_file]
infocode
[switches]
[sequence_file]
infocode
[switches]
[sequence_file]
mc2mol
[sequence_file]
mega2mol
[sequence_file]
mol2info
[sequence_file]
mol2seq
[sequence_file]
molcons
[sequence_file]
molsplit
[sequence_file]
njt2tpl
[machine_readable_tree_with_branch_length]
mol2mol
[sequence_file]
nuc2NUC
[sequence_file]
rmid3
[switches]
[sequence_file]
rmleu
[switches]
[sequence_file]
rmsyno
[switches]
[sequence_file]
seq2mol
[sequence_file]
seqwrap
[file]
DESCRIPTION
This is the Debian GNU/Linux version of the MOLPHY (ProtML) distribution, version 2.3. Copyright (c) 1992-1996, Jun Adachi & Masami Hasegawa. All rights reserved.
MOLPHY is a program package for MOLecular PHYlogenetics.
The perl utilities above are usefull to convert different formats of phylogenetic data.
AUTHOR
This manual page was written by Andreas Tille <tille@debian.org>, for the Debian GNU/Linux system (but may be used by others).
CETTE PAGE DOCUMENTE AUSSI :
- mol2inf
- phy2mol
- ali2mol
- rmsyno
- degene4
- getcds
- dna2ami
- int2mol
- egetcds
- ggetcds
- inf2mol
- infocode
- mol2int
- mega2mol
- nuc2code
- molcut
- mol2mol
- mol2phy
- mol2seq
- molcodon
- molcons
- molinfo
- molmerge
- rmleu
- molsplit
- njt2tpl
- nuc2NUC
- nuc2ptn
- mc2mol
- rminsdel
- seq2mol
- seqwrap
- must2mol
- rmid3
- molrev
- molcat
- infocode2
- disjoint
- eali2mol
- degene4l
- clus2mol