- clips
- 
clips	- an expert system programming language
- clisp
- 
ANSI Common Lisp compiler, interpreter and debugger.
- clmake
- 
color wrapper for make(1) and less(1)
- clmclose
- 
Fetch connected components from graphs or subgraphs
- clmdist
- 
compute the distance between two or more partitions (clusterings).
- clmformat
- 
display cluster results in readable form
- clmimac
- 
Interpret Matrices (c.q. MCL iterands output by mcl) As Clusterings.
- clminfo
- 
Compute performance measures for graphs and clusterings.
- clmmate
- 
compute best matches between two clusterings
- clmmeet
- 
compute the intersection of a set of clusterings.
- clmorder
- 
reorder indices to represent blocks from different clusterings.
- clmresidue
- 
extend clustering of subgraph to clustering of graph.
- cln-config
- 
script to get information about the installed version of the CLN library
- clogin
- 
Cisco/Foundry login script
- clrwrap
- 
wrap a CLR-compatible executable
- clustalw
- 
a multiple sequence alignment program
- clustalw-mpi
- 
MPI distributed ClustalW
- clustalx
- 
a multiple sequence alignment program
- cl_status
- 
Check Status of the High-Availability Linux (Linux-HA) Subsystem
- cm2rem
- 
Convert Sun's "cm" input file to Remind format
- cmafihe
- 
Lojban word glosser
- cmake
- 
Cross-Platform Makefile Generator.
- cmaketest
- 
Cross-platform Makefile generator.
- cmatrix
- 
CMatrix
- cmddump
- 
simulated TRS-80 CMD file loader
- cmdebug
- 
Reports the status of a host Cache Manager
- cmix
- 
The C-Mix/II program specializer
- cmixshow
- 
browser for C-Mix/II feedback output
- cmkdir
- 
create encrypted directory for CFS
- cmkkey
- 
create secondary copy of CFS directory key
- cmml-fix
- 
transforms a sloppily written CMML instance document into a valid one.
- cmml-timeshift
- 
Apply a timeshift to all the clip tags.
- cmml-validate
- 
validates a CMML instance document against the cmml.dtd and some further rules.
- cmp
- 
compare two files
- cmp
- 
Comparer deux fichiers.
- cmucl
- 
CMU Common Lisp
- cmuwmtopbm
- 
convert a CMU window manager bitmap into a portable bitmap
- Cn3D-3.0
- 
a 3-dimensional viewer for biological molecules
- cnid_index
- 
check and repair Netatalk CNID database indexes
- co
- 
check out RCS revisions
- coax
- 
determine impedance of a coaxial structure, where the inner may be offset from the centre if
necessary.
- cobfusc
- 
cobfusc
- cococs
- 
Coco/R Compiler Generator (C-Sharp Version)
- cocoj
- 
Coco/R Compiler Generator (Java Version)
- code2html
- 
Converts a program source code to HTML
- codechanges
- 
computes the amount of code changes between two code trees or single files
- codeEditor
- 
A Python-aware code editor written using the PythonCard GUI framework
- codegroup
- 
encode / decode binary file as five letter codegroups
- codeine
- 
video player for KDE designed to be as simple as possible
- codepage
- 
extract a codepage from an MSDOS codepage file